Hi~ I used the hisat2-stringtie pipeline to deal with RNA-seq data and got a result with MSTRG tags. Some of them had gene name which was convenient to do function annotation after. But 1/3 of my data had rows with MSTRAG tag merely like this:
chr6 StringTie transcript 72101340 72101890 1000 - . gene_id "MSTRG.58117"; transcript_id "MSTRG.58117.1";
chr6 StringTie exon 72101340 72101890 1000 - . gene_id "MSTRG.58117"; transcript_id "MSTRG.58117.1"; exon_number "1";
Is there any suggestions on how to deal with them?
Thanks! Aoi