Hi,
I have a vcf file containing 210000 variants (SNPs and INDELS) and 1480 individuals from streptococcus pneumonia bacterium. I need a tool to perform a GWAS on this set of variants. Any tool suggestion?
This question was asked at least several times here.
Bacterial GWAS analysis?
Go to the left upper corner of the page, press "Latest" and insert 'GWAS bacteria' into the empty panel in the middle.
Another way - try ncbi: www.ncbi.gbk.nih.gov,
using these keywords: GWAS AND tools AND bacteria NOT human NOT animal
Ona more way: try google.scholar.com
There are some articles there as well.
Login before adding your answer.
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
