I'm downloading public data files from NCBI using (for example)
fastq-dump --split-files -F --bzip2 SRR2637659 > SRR2637659.out 2> SRR2637659.err
however, these commands crash every 6 runs or so, and download very very slowly. So far the only solution is to simply start again when
The problem is that after I leave work I cannot restart this, or when I'm sleeping. Is there any option or clever trick so I don't have to keep manually re-starting this every time
or even better yet, is there an option that for a given accession number, e.g. GSE88888, I can download all fastq associated with this data set? that would simply downloading greatly as well.