I am trying to run a command:
bedtools intersect -wao -f 0.75 -a A.gtf -b B.gtf > output.bed
and I get segmentation fault.
The command runs fine without the
There are apparently no memory issues. I am running the code on a linux cluster and running the
free -m command shows that there is enough memory on the node.
I looked that the bedtools intersect documentation and it mentions that the
-wao option is restricted by the
-f option. Is that what causing the segmentation fault ?
Your help will be greatly appreciated.