Question: Problem phasing Indels
0
gravatar for hdtms
18 months ago by
hdtms 20
hdtms 20 wrote:

Hi I tried to phase my Indel vcf file using BEAGLE and I got an error, I then read in these forum that BEAGLE can't be used for Indels. My question is: Is there another program to do this?

beagle phasing indels • 653 views
ADD COMMENTlink written 18 months ago by hdtms 20
1

Phasing tools via omicsoft.

ADD REPLYlink modified 18 months ago • written 18 months ago by genomax68k
1

If I understood correctly OP already has identified the indels, but now wants to phase those. Beagle indeed only handles well behaving biallelic substitutions.

ADD REPLYlink written 18 months ago by WouterDeCoster39k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 952 users visited in the last hour