Question: Problem phasing Indels
gravatar for hdtms
12 months ago by
hdtms 20
hdtms 20 wrote:

Hi I tried to phase my Indel vcf file using BEAGLE and I got an error, I then read in these forum that BEAGLE can't be used for Indels. My question is: Is there another program to do this?

beagle phasing indels • 477 views
ADD COMMENTlink written 12 months ago by hdtms 20

Phasing tools via omicsoft.

ADD REPLYlink modified 12 months ago • written 12 months ago by genomax59k

If I understood correctly OP already has identified the indels, but now wants to phase those. Beagle indeed only handles well behaving biallelic substitutions.

ADD REPLYlink written 12 months ago by WouterDeCoster35k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1153 users visited in the last hour