Question: Problem phasing Indels
0
gravatar for hdtms
10 months ago by
hdtms 20
hdtms 20 wrote:

Hi I tried to phase my Indel vcf file using BEAGLE and I got an error, I then read in these forum that BEAGLE can't be used for Indels. My question is: Is there another program to do this?

beagle phasing indels • 440 views
ADD COMMENTlink written 10 months ago by hdtms 20
1

Phasing tools via omicsoft.

ADD REPLYlink modified 10 months ago • written 10 months ago by genomax57k
1

If I understood correctly OP already has identified the indels, but now wants to phase those. Beagle indeed only handles well behaving biallelic substitutions.

ADD REPLYlink written 10 months ago by WouterDeCoster32k
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