Question: RNA seq of wheat genome
gravatar for fatimarasool135
16 months ago by
fatimarasool13520 wrote:

I have run the cufflink tool to find out deferentially expressed genes in 6 varieties of wheat genome.I have the excel sheet file containing information like

test_id gene_id gene    locus   sample_1    sample_2    status  value_1 value_2 log2(fold_change)   test_stat   p_value q_value significant
TSS106585   XLOC_100141 gene:TRIAE_CS42_7BL_TGACv1_577953_AA1886590,gene:TRIAE_CS42_7BL_TGACv1_577953_AA1886600 TGACv1_scaffold_577953_7BL:74880-82825  Batis   Blue_silver OK  248.892 168.837 -0.559883   -2.29371    0.0012  0.00456823  yes

kindly let me know ,how can i interpret these value?what is the meaning of column..

rna-seq next-gen • 532 views
ADD COMMENTlink modified 16 months ago by genomax65k • written 16 months ago by fatimarasool13520

Explanation for the columns in output produced by cufflinks analysis is on cufflinks page.

ADD REPLYlink modified 16 months ago • written 16 months ago by genomax65k
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