Question: RNA seq of wheat genome
gravatar for fatimarasool135
2.6 years ago by
fatimarasool13560 wrote:

I have run the cufflink tool to find out deferentially expressed genes in 6 varieties of wheat genome.I have the excel sheet file containing information like

test_id gene_id gene    locus   sample_1    sample_2    status  value_1 value_2 log2(fold_change)   test_stat   p_value q_value significant
TSS106585   XLOC_100141 gene:TRIAE_CS42_7BL_TGACv1_577953_AA1886590,gene:TRIAE_CS42_7BL_TGACv1_577953_AA1886600 TGACv1_scaffold_577953_7BL:74880-82825  Batis   Blue_silver OK  248.892 168.837 -0.559883   -2.29371    0.0012  0.00456823  yes

kindly let me know ,how can i interpret these value?what is the meaning of column..

rna-seq next-gen • 847 views
ADD COMMENTlink modified 2.6 years ago by genomax87k • written 2.6 years ago by fatimarasool13560

Explanation for the columns in output produced by cufflinks analysis is on cufflinks page.

ADD REPLYlink modified 2.6 years ago • written 2.6 years ago by genomax87k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1401 users visited in the last hour