Entering edit mode
6.9 years ago
SaltedPork
▴
170
Hi
What I have is a tab delimited file with the frequency of each base at each position in the sequence. How can I take this data and show a coverage % across the entire sequence, just one number.
sample input:
Position A C G T
1 0 0 1 0 0
2 4 0 0 0 0
3 0 5 0 0 0
4 0 0 0 5 0
5 0 15 0 0 0
6 0 0 108 0 0
7 0 0 147 0 0
Do you have any lines of all 0 coverage?
Yes there will be. Mostly at the beginning.