Question

construction of gene co-expression network based on CPM values

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6.3 years ago

Neu ▴ 10

Hi, Will it be correct to generate gene co-expression network from count per million (CPM) values?

RNA-Seq next-gen • 1.7k views

ADD COMMENT • link updated 6.3 years ago by Kevin Blighe 87k • written 6.3 years ago by Neu ▴ 10

score 0 · Answer 1 · 2017-12-22

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6.3 years ago

Kevin Blighe 87k

Depends on which tool you are aiming to use. If it's something like WGCNA or by following this method, then it will be based just on correlation and therefore it's 'okay'.

ADD COMMENT • link 5.2 years ago by Kevin Blighe 87k