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• (Closed) IGV Visualization Insert Size
  Hi, I have a question regarding visualization of the large structural variations through IGV. ...
• Does A Large Variation In Insert Sizes For Paired End Illumina Sequencing Affect Snp Calling?
  Qn: does a large variation in insert sizes for paired end Illumina sequencing affect SNP calling?...
• IGV Visualization Insert Size
  Hi, I am visualizing alignments using IGV. I want to ask what do you mean by Insert? Is insert ...
• Structural variation detection from RNA-seq
  Hello I have two sets of reads that were obtained from RNA bulks of resistant and susceptible wh...
• Sequence Variation Detection For Prokaryotic Genomes
  I have resequenced a bacterial genome using SOLiD paired end reads. After looking at SNPs and sma...
• large insertion/deletion detection from NGS data
  Dear all, I am struggling with identification of large insertion/deletion as well as variants ca...
• Most Appropriate Software Detect Population Specific Structural Variation In Multiple Low-Coverage Genomes?
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• Extreme large insert size of BWA alignment
  The BAM file I am dealing with consist some alignments with extremely large insert size. For exa...
• Structural Variations With Gasvpro
  Good afternoon, I have a .bam file with paired-ends alignments and, with GASVPro, I have predict...
• How to visualize Proteome Networks
  How can I visualize whole proteome network for any particular organism? Is there any tool or soft...
• Is annovar suitable for structural rearrangements instead of SNPs or INDEL?
  Hi there. I am interested in detecting structural rearrangements such as large insertions, delet...
• IGB Visualization for Depth Graph
  Hello, I am having some difficulties visualizing my depth graph on the IGB software. Is there a...
• Fragment size for Illumina Miseq 2 x 250-bp sequencing
  I am simulating Illumina MiSeq 2 x 250-bp data with ART (https://www.niehs.nih.gov/research/resou...
• Best-guessing insert size and stddev in MISO using paired-end data versus running MISO single ended
  I am conducting a miso analysis for a single gene on a large number of Paired End RNAseq bams tha...
• Is this mate pair insert size distribution to broad?
  I got Illumina mate pair data. The insert size distribution is as follows: http://imgur.com/bhKr...
• Estimate insert size for pacbio long reads
  I am trying to use pacbio long reads to do gap filling using GapFiller program. What is the corre...
• Best experimental/bioinfo protocol to genotype large insertions?
  Hello, I am trying to find what would be the best way to identify a large insertion (~1kb) in a ...
• Breakdancer Bam2Cfg.Pl , Coefficient Of Variation Is Too Large, Not Excluding Outliers?
  When running breakdancer bam2cfg.pl I get the following error. breakDancer_1.4.1/breakdancer/pe...
• RNASEQ preprocessing and insert size
  Dear all, I have RNASeq data. I have to estimate insert size for multiple samples. For this, I a...
• PBSuite spots ambiguous insertion output value
  Hi, I am using PBSuite version 15.8.24 `Honey.py spots` was used to identify structure variation...
• Inversion detection for very large (2 megabase pairs plus )inversions for mapping?
  Hello biostars, I wanted to know if any of you has had any experience with software detecting ve...
• Aligning with huge insertion variations
  What would be the best way to align multiple gene sequences that all have various large insertion...
• Bam2Cfg Parameter Description
  I've been looking through all the Breakdancer docs for more detailed description of the options i...