Question: Visualization software for large variations
0
gravatar for rse
3.1 years ago by
rse90
Singapore
rse90 wrote:

Hi,

Is there good visualization software for large variations? I am aware of IGV but i am having difficulty in estimating the large variations. Also what is insert size and how does it correlate to the size of the deletion/insertion?

Thanks

sequencing next-gen alignment • 782 views
ADD COMMENTlink modified 3.1 years ago • written 3.1 years ago by rse90

Thanks, but i have to do from alignment data (.bam files)

ADD REPLYlink written 3.1 years ago by rse90
1
gravatar for cpad0112
3.1 years ago by
cpad011214k
Hyderabad India
cpad011214k wrote:

Circos

ADD COMMENTlink modified 3.1 years ago • written 3.1 years ago by cpad011214k
0
gravatar for Ram
3.1 years ago by
Ram160
Germany
Ram160 wrote:

Yes, you can use junction files obtained along with alignment files by using available alignment tool. After that you can import junction files for obtaining Circos plot by using Circos software: http://circos.ca/software/

ADD COMMENTlink written 3.1 years ago by Ram160
0
gravatar for rse
3.1 years ago by
rse90
Singapore
rse90 wrote:

Ok, will try. Thank you

ADD COMMENTlink written 3.1 years ago by rse90
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