Question

Visualization software for large variations

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6.3 years ago

rse ▴ 100

Hi,

Is there good visualization software for large variations? I am aware of IGV but i am having difficulty in estimating the large variations. Also what is insert size and how does it correlate to the size of the deletion/insertion?

Thanks

alignment next-gen sequencing • 1.4k views

ADD COMMENT • link 6.3 years ago by rse ▴ 100

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Thanks, but i have to do from alignment data (.bam files)

ADD REPLY • link 6.3 years ago by rse ▴ 100

score 1 · Answer 1 · 2017-12-26

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6.3 years ago

cpad0112 21k

Circos

ADD COMMENT • link 6.3 years ago by cpad0112 21k

score 0 · Answer 2 · 2017-12-29

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6.3 years ago

Ram ▴ 190

Yes, you can use junction files obtained along with alignment files by using available alignment tool. After that you can import junction files for obtaining Circos plot by using Circos software: http://circos.ca/software/

ADD COMMENT • link 6.3 years ago by Ram ▴ 190

score 0 · Answer 3 · 2018-01-04

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6.3 years ago

rse ▴ 100

Ok, will try. Thank you

ADD COMMENT • link 6.3 years ago by rse ▴ 100