Question: Visualization software for large variations
0
gravatar for rse
11 months ago by
rse70
Singapore
rse70 wrote:

Hi,

Is there good visualization software for large variations? I am aware of IGV but i am having difficulty in estimating the large variations. Also what is insert size and how does it correlate to the size of the deletion/insertion?

Thanks

sequencing next-gen alignment • 420 views
ADD COMMENTlink modified 11 months ago • written 11 months ago by rse70

Thanks, but i have to do from alignment data (.bam files)

ADD REPLYlink written 11 months ago by rse70
1
gravatar for cpad0112
11 months ago by
cpad011210k
India
cpad011210k wrote:

Circos

ADD COMMENTlink modified 11 months ago • written 11 months ago by cpad011210k
0
gravatar for Ram
11 months ago by
Ram130
Germany
Ram130 wrote:

Yes, you can use junction files obtained along with alignment files by using available alignment tool. After that you can import junction files for obtaining Circos plot by using Circos software: http://circos.ca/software/

ADD COMMENTlink written 11 months ago by Ram130
0
gravatar for rse
11 months ago by
rse70
Singapore
rse70 wrote:

Ok, will try. Thank you

ADD COMMENTlink written 11 months ago by rse70
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1265 users visited in the last hour