Question: Visualization software for large variations
0
gravatar for rse
9 months ago by
rse70
Singapore
rse70 wrote:

Hi,

Is there good visualization software for large variations? I am aware of IGV but i am having difficulty in estimating the large variations. Also what is insert size and how does it correlate to the size of the deletion/insertion?

Thanks

sequencing next-gen alignment • 390 views
ADD COMMENTlink modified 9 months ago • written 9 months ago by rse70

Thanks, but i have to do from alignment data (.bam files)

ADD REPLYlink written 9 months ago by rse70
1
gravatar for cpad0112
9 months ago by
cpad01129.3k
India
cpad01129.3k wrote:

Circos

ADD COMMENTlink modified 9 months ago • written 9 months ago by cpad01129.3k
0
gravatar for Ram
9 months ago by
Ram110
Germany
Ram110 wrote:

Yes, you can use junction files obtained along with alignment files by using available alignment tool. After that you can import junction files for obtaining Circos plot by using Circos software: http://circos.ca/software/

ADD COMMENTlink written 9 months ago by Ram110
0
gravatar for rse
9 months ago by
rse70
Singapore
rse70 wrote:

Ok, will try. Thank you

ADD COMMENTlink written 9 months ago by rse70
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 759 users visited in the last hour