Question: PICARD tools param database
0
gravatar for win
3.1 years ago by
win860
India
win860 wrote:

hi all. happy new year.

in reference to PICARD tools found here

https://broadinstitute.github.io/picard/command-line-overview.html

i wanted to know if there is a database of picard tools database that contains list of each picard tool and all the parameters that go with it? Like an excel or maybe a mySQL database of that sort?

any pointers. thanks in advance.

picard • 521 views
ADD COMMENTlink modified 3.1 years ago by Raony Guimarães1.1k • written 3.1 years ago by win860
1
gravatar for Raony Guimarães
3.1 years ago by
Dublin / Ireland
Raony Guimarães1.1k wrote:

Hi there,

If you want a more comprehensive list of Picard commands and parameters you can refer to the Javadoc:

http://broadinstitute.github.io/picard/javadoc/picard/index.html

Or the Picard metric definitions:

https://broadinstitute.github.io/picard/picard-metric-definitions.html

And the FAQ:

http://broadinstitute.github.io/picard/faq.html

Ultimately if you want to have this offline and accessible through a database you can download it with:

wget --no-parent --recursive --level=inf --page-requisites --wait=1 http://broadinstitute.github.io/picard/javadoc/picard/index.html

ADD COMMENTlink modified 3.1 years ago • written 3.1 years ago by Raony Guimarães1.1k
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