Getting full list for DEGs in Noiseq

0

Entering edit mode

6.3 years ago

mubangafchama ▴ 10

Hello everyone

I have downloaded NOISEQ and managed to import the data and run my analysis for differentially expressed genes. However, I can't find a way to see/download the entire file of results. All I get is a snippet showing me the M and D results for for the first 6 rows (I have 21000 rows). This is the code I used > head(mynoiseq@results[[1]]) (it's in R). Will appreciate any help.

Here's a link to the NOISEQ package I downloaded from Bioconductor http://www.bioconductor.org/packages/release/bioc/html/NOISeq.html

RNA-Seq • 1.6k views

ADD COMMENT • link updated 11 months ago by Ram 43k • written 6.3 years ago by mubangafchama ▴ 10

1

Entering edit mode

head by default returns 6 rows. If you want to see more then use a number like (in this case 10)

head(mynoiseq@results[[1]], 10)

ADD REPLY • link 6.3 years ago by GenoMax 141k

0

Entering edit mode

Thank you so much Genomax.

ADD REPLY • link 6.3 years ago by mubangafchama ▴ 10

Login before adding your answer.