Question: syntax error in R when run on HPC
0
gravatar for amy16
18 months ago by
amy1640
amy1640 wrote:

Hi, I get following syntax error message when I run R script on HPC for DGE analysis using ballgown. any help is very much appreciated.

syntax error near unexpected token Ballgown' library(Ballgown)'

-Thanks

rna-seq ballgown R • 555 views
ADD COMMENTlink written 18 months ago by amy1640
1

in the R code, remove the quote after )

ADD REPLYlink modified 18 months ago • written 18 months ago by Pierre Lindenbaum121k

Command line: library("Ballgown") The error message: /tmp/slurmd/job5624031/slurm_script: line 15: syntax error near unexpected token "Ballgown"' /tmp/slurmd/job5624031/slurm_script: line 15:library("Ballgown")' Also, I've tried writing library(Ballgown), still the same error message.

ADD REPLYlink modified 18 months ago • written 18 months ago by amy1640
1

Your question lacks sufficient information for us to help. Please read Tutorial: How To Ask Good Questions On Technical And Scientific Forums.

ADD REPLYlink modified 18 months ago • written 18 months ago by h.mon26k
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