Question: syntax error in R when run on HPC
0
gravatar for amy16
14 months ago by
amy1640
amy1640 wrote:

Hi, I get following syntax error message when I run R script on HPC for DGE analysis using ballgown. any help is very much appreciated.

syntax error near unexpected token Ballgown' library(Ballgown)'

-Thanks

rna-seq ballgown R • 438 views
ADD COMMENTlink written 14 months ago by amy1640
1

in the R code, remove the quote after )

ADD REPLYlink modified 14 months ago • written 14 months ago by Pierre Lindenbaum118k

Command line: library("Ballgown") The error message: /tmp/slurmd/job5624031/slurm_script: line 15: syntax error near unexpected token "Ballgown"' /tmp/slurmd/job5624031/slurm_script: line 15:library("Ballgown")' Also, I've tried writing library(Ballgown), still the same error message.

ADD REPLYlink modified 14 months ago • written 14 months ago by amy1640
1

Your question lacks sufficient information for us to help. Please read Tutorial: How To Ask Good Questions On Technical And Scientific Forums.

ADD REPLYlink modified 14 months ago • written 14 months ago by h.mon24k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 736 users visited in the last hour