Known Indels and BED sites
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3.2 years ago
win ▴ 890

Hi all, i am conducting whole exome sequencing using GATK and I wanted the VCF for known indels and a BED file for exome analysis.

Is there an known Indel file for hg38 and also a BED for the same. I am finding the InDel file for GrCh37 but I wanted to hg38.

Any pointers appreciated a lot.

Thanks

WES • 1.2k views
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It looks like dbSnp build 150 is in line with GRCh38. Their FTP site has both VCF and BED files.

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