Question: Problem in installing rMATS through conda?
0
gravatar for majeedaasim
18 months ago by
majeedaasim40
United States
majeedaasim40 wrote:

I tried to install rMATS through conda using the command:

conda install -c bioconda rmats

Following error appears:

 UnsatisfiableError: The following specifications were found to be in conflict:
      - pexpect
      - rmats
Use "conda info <package>" to see the dependencies for each package.

MY system info is

Architecture:          x86_64
CPU op-mode(s):        32-bit, 64-bit
Byte Order:            Little Endian
CPU(s):                32
On-line CPU(s) list:   0-31
Thread(s) per core:    2
Core(s) per socket:    8
Socket(s):             2
NUMA node(s):          2
Vendor ID:             GenuineIntel
CPU family:            6
Model:                 79
Model name:            Intel(R) Xeon(R) CPU E5-2620 v4 @ 2.10GHz
Stepping:              1
CPU MHz:               1245.000
CPU max MHz:           2100.0000
CPU min MHz:           1200.0000
BogoMIPS:              4195.04

How to fix it? Thanks

conda rmats • 718 views
ADD COMMENTlink modified 18 months ago by Vimalkumar Velayudhan190 • written 18 months ago by majeedaasim40
0
gravatar for Vimalkumar Velayudhan
18 months ago by
Ireland
Vimalkumar Velayudhan190 wrote:

What are the outputs of conda info pexpect and conda list? Most likely the Python 3 version of pexpect is installed. rmats requires a Python 2 environment.

ADD COMMENTlink written 18 months ago by Vimalkumar Velayudhan190

In that case, creating a conda virtual environment could save you a ton of trouble.

ADD REPLYlink written 18 months ago by WouterDeCoster40k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1636 users visited in the last hour