Question: Micro array gene expression data correlation
0
gravatar for Santosh
3 months ago by
Santosh0
University of Hyderabad
Santosh0 wrote:

I have gene expression data and I want to do gene co-expression correlation to construct co-expression network analysis. I am not fully understanding how to to do this correlation between genes. and what file formate will require for this. I have gene expression data between two group drug sensitive and drug-resistant. can anyone help me to solve my problem?

R • 212 views
ADD COMMENTlink written 3 months ago by Santosh0

Have you looked at WGCNA?

ADD REPLYlink written 3 months ago by WouterDeCoster27k

yeah, but I am not getting a proper way. like how to do by using WGCNA.

ADD REPLYlink written 3 months ago by Santosh0

Represent each gene as a vector of expression values then compute the correlation matrix. This represents the adjacency matrix of a graph. File format depends on what language/software you're going to use to do this.

ADD REPLYlink written 3 months ago by Jean-Karim Heriche15k
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