Question: Analysis of paired-end GBS data
0
gravatar for Denis
2.6 years ago by
Denis190
Denis190 wrote:

Hi there!

I'm working on GBS data analysis of plants with available reference genome. I already tried Tassel 5 GBS v2 pipeline (https://bitbucket.org/tasseladmin/tassel-5-source/wiki/Tassel5GBSv2Pipeline) and it performed quite well on our data. The main issue that Tassel doesn't accept paired-end (PE) data that we alredy have got. Would you advise me an efficient pipeline for GBS data analysis that's able to handle Illumina PE data please?

snp next-gen genome • 1.3k views
ADD COMMENTlink written 2.6 years ago by Denis190

Have you got any solution to above mentioned problem?

ADD REPLYlink written 12 months ago by toralmanvar840
1

Hi! Try GB-easy

ADD REPLYlink modified 10 months ago by lakhujanivijay5.1k • written 12 months ago by Denis190
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