Question: Analysis of paired-end GBS data
0
gravatar for Denis
16 months ago by
Denis50
Denis50 wrote:

Hi there!

I'm working on GBS data analysis of plants with available reference genome. I already tried Tassel 5 GBS v2 pipeline (https://bitbucket.org/tasseladmin/tassel-5-source/wiki/Tassel5GBSv2Pipeline) and it performed quite well on our data. The main issue that Tassel doesn't accept paired-end (PE) data that we alredy have got. Would you advise me an efficient pipeline for GBS data analysis that's able to handle Illumina PE data please?

snp next-gen genome • 732 views
ADD COMMENTlink written 16 months ago by Denis50
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 880 users visited in the last hour