Question: Comparing Illumina with Affymetrix data
0
gravatar for alcar
24 months ago by
alcar0
Québec, Canada
alcar0 wrote:

I have data from a 50k Illumina bovine chip and data from a 600k Affymetrix bovine chip and I would like to do analyses on the SNPs that are common to both chips.

Do you know a way to get all the common SNPs from both chips since Illumina and Affymetrix don't use the same SNP IDs and genome assembly?

Thank you

affymetrix snp illumina • 1.2k views
ADD COMMENTlink modified 24 months ago by Rashedul Islam340 • written 24 months ago by alcar0
0
gravatar for Rashedul Islam
24 months ago by
Canada
Rashedul Islam340 wrote:

Two relevant discussion on the question:

  1. Mapping Illumina Snp Ids To Rs Ids.

  2. rs id comparison between genome version or build.

ADD COMMENTlink written 24 months ago by Rashedul Islam340
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