I have 100 bigwig files and a bed file which has 80 features. I want to load all the bigwig files and bed annotation file in IGV and for each feature I want to output an image which has for each feature all the loaded 100 bigwig files. In total I should have 80 graphs(for 80 features). Also I want it to scroll and not a screen shot as I want to see all the bigwig files. I am writing a batch script as told in IGV but I cannot get all the bigwig files to display.
Any help how to do it is appreciated.