I very confused, regarding biallelic and multiallelic genotype (GT) likelihoods, how it is calculated ?
F(j/k) = (k*(k+1)/2)+j.
can any one explain.
where did you find this equation ?
Sorry, for late response. Can you go through this link https://github.com/samtools/hts-specs/blob/master/VCFv4.2.pdf
page no.6 Genotype likelihoods
That's for GL, not GT.
Please use the formatting bar (especially the code option) to present your post better. I've done it for you this time.