Question: How to calculate genotype (GT) likelihoods ?
gravatar for pinninti1991reddy
6 weeks ago by
IIT Madras - Chennai
pinninti1991reddy10 wrote:

Hi I very confused, regarding biallelic and multiallelic genotype (GT) likelihoods, how it is calculated ?

F(j/k) = (k*(k+1)/2)+j.

can any one explain. Thanks

sequencing snp genome • 188 views
ADD COMMENTlink modified 25 days ago by Ram13k • written 6 weeks ago by pinninti1991reddy10

where did you find this equation ?

ADD REPLYlink written 25 days ago by Pierre Lindenbaum105k

Sorry, for late response. Can you go through this link page no.6 Genotype likelihoods

ADD REPLYlink written 14 days ago by pinninti1991reddy10

That's for GL, not GT.

ADD REPLYlink written 13 days ago by Ram13k

Please use the formatting bar (especially the code option) to present your post better. I've done it for you this time. Formatting bar

ADD REPLYlink written 25 days ago by Ram13k
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