I very confused, regarding biallelic and multiallelic genotype (GT) likelihoods, how it is calculated ?
F(j/k) = (k*(k+1)/2)+j.
can any one explain.
where did you find this equation ?
Sorry, for late response. Can you go through this link https://github.com/samtools/hts-specs/blob/master/VCFv4.2.pdf
page no.6 Genotype likelihoods
That's for GL, not GT.
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