I am going to work with annotated wasp genome, but there is a lot of redundancy in the annotation. Meaning there is a lot of different hits for most of the predicted coding regions. The genome was annotated with Maker2. I would like to filter it and keep only the best quality matches. I was wondering if you could propose the best tool for it? Note that this is the first time assembled genome, there is no reference or any other research.
Thank you in advance :)