Hi. I am a 'R' starter. And recently, I analysed GEO database about my research fields. I have a question about analytic method. The analytic method of DEseq2 contain rlog formation? To reduce the amount of heteroskedasticity, many analytic methods contain several means to shrink the variance of low read count. So people convert raw data by rlog formation instead of log2 formation. I'm curious about the function of DEseq2 contain this rlog formation or I should convert these DEseq 's output data to rlog Data? Thank you. I look forward to your precious reply.
Question: DESEQ analysis contain rlog formation?
18 months ago by
soojinima • 10
soojinima • 10 wrote:
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