Do you know which tool to use to generate and print stem-loop from from a short sequence ?
For instance, using the following mir sequence:
>hsa-mir-7106 MI0022957 GCUUCUGGGAGGAGGGGAUCUUGGGAGUGAUCCCAACAGCUGAGCUCCCUGAAUCCCUGUCCCAG
I would like to print the following alignement
gcuu gga cuu gauccc 5' cuggga ggggau gggagu a |||||| |||||| |||||| a 3' gacccu ucccua cccucg c ---- --g agu agucga