Question: stringtie and fpkm and coverage
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gravatar for qudrat
2.4 years ago by
qudrat70
NATIONAL INSTITUTE OF IMMUNOLOGY, INDIA
qudrat70 wrote:

Hello all, I have assembled transcripts from a tissue using StringTie and I want to filter transcripts so that I can get rid of false positive results. What value should I consider fpkm or coverage and what should be minimum threshold?

rna-seq assembly • 1.2k views
ADD COMMENTlink written 2.4 years ago by qudrat70

You could adapt the ExN50 from Trinity.

ADD REPLYlink written 2.4 years ago by h.mon30k
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