Break the VCF file to 5 populations

Question

[mostafarafiepour]

Hi all,

My final VCF file contains 5 populations, and I want to break it into 5 populations first to phasing genotypes. So I do not know how to do it. What software and command should I use?

Best Regard

mostafa

[Pierre Lindenbaum]

did you see: Extract subset of samples from multigenome vcf file ?

[mostafarafiepour]

many thanks for your reply,

Sorry, I did not know exactly which command line I used to break my VCF file into 5 populations??

[GenoMax]

Complete commands (vcf-subset or bcftools) are in the thread that @Pierre linked.

sample.txt is the list of samples per line