Question: Target identification of transiption factor
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gravatar for au.rinki.bio
8 days ago by
au.rinki.bio0 wrote:

hello Biostar, I have a list of the transcription factor, I want know gene which this transcription factor regulates. kindly suggest me database or tools where I get this type of information. thanking you.

trancription factor • 62 views
ADD COMMENTlink modified 8 days ago by Alex Reynolds23k • written 8 days ago by au.rinki.bio0
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gravatar for Alex Reynolds
8 days ago by
Alex Reynolds23k
Seattle, WA USA
Alex Reynolds23k wrote:

You could look for ChIP-seq data for your TFs of interest, which would indicate TF binding in gene regulatory regions. Or take the proximal or distal promoter regions of your genes of interest via BEDOPS and run FIMO or other motif discovery tools on those regions to get putative binding sites from your motif models (i.e., TFs) of interest.

ADD COMMENTlink written 8 days ago by Alex Reynolds23k
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