Question: Target identification of transiption factor
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gravatar for au.rinki.bio
21 months ago by
au.rinki.bio10
University of Allahabad, India
au.rinki.bio10 wrote:

hello Biostar, I have a list of the transcription factor, I want know gene which this transcription factor regulates. kindly suggest me database or tools where I get this type of information. thanking you.

trancription factor • 406 views
ADD COMMENTlink modified 21 months ago by Alex Reynolds29k • written 21 months ago by au.rinki.bio10
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gravatar for Alex Reynolds
21 months ago by
Alex Reynolds29k
Seattle, WA USA
Alex Reynolds29k wrote:

You could look for ChIP-seq data for your TFs of interest, which would indicate TF binding in gene regulatory regions. Or take the proximal or distal promoter regions of your genes of interest via BEDOPS and run FIMO or other motif discovery tools on those regions to get putative binding sites from your motif models (i.e., TFs) of interest.

ADD COMMENTlink written 21 months ago by Alex Reynolds29k
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