Question: Target identification of transiption factor
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gravatar for au.rinki.bio
7 months ago by
au.rinki.bio10
au.rinki.bio10 wrote:

hello Biostar, I have a list of the transcription factor, I want know gene which this transcription factor regulates. kindly suggest me database or tools where I get this type of information. thanking you.

trancription factor • 178 views
ADD COMMENTlink modified 7 months ago by Alex Reynolds26k • written 7 months ago by au.rinki.bio10
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gravatar for Alex Reynolds
7 months ago by
Alex Reynolds26k
Seattle, WA USA
Alex Reynolds26k wrote:

You could look for ChIP-seq data for your TFs of interest, which would indicate TF binding in gene regulatory regions. Or take the proximal or distal promoter regions of your genes of interest via BEDOPS and run FIMO or other motif discovery tools on those regions to get putative binding sites from your motif models (i.e., TFs) of interest.

ADD COMMENTlink written 7 months ago by Alex Reynolds26k
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