Question: Kraken Build Custom Database
gravatar for himani.khurana1
2.4 years ago by
himani.khurana10 wrote:

It has been almost 3 days that it is at step1 of kraken

Creating k-mer set (step 1 of 6)
Found jellyfish v1.1.10
Hash size not specified, using 18937420000

The path for database is in external hard disk

Although no error reported but is there anything wrong that I might be doing I have my server with 128 GB memory and 1TB space in hard disk It is already consuming around 107 GB I have also specified threads=20

Is there something else I should do?

ADD COMMENTlink modified 2.4 years ago by RamRS30k • written 2.4 years ago by himani.khurana10

It takes usually, maybe mostly, longggg time, and 128 GB and 1 TB will not be sufficient based on my experience. Instead of that, you can use standard kraken database.

ADD REPLYlink written 2.4 years ago by Mehmet600
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