Hi guys, I'm new at using BLAST locally from command line. I'm trying to find a way to display the full taxonomy information instead of staxid in Blastn output. Here's the command using till today:
$ blastn -query contigs.fasta -db BacteriaDB -evalue 10 -outfmt "7 qseqid qlen slen qcovhsp sseqid stax evalue score" -num_alignments 10 -out output.txt
The idea here is to get the output (I'm telling always as a taxonomy level) as provided by the standard "3" for outfmt
$ blastn -query contigs.fasta -db BacteriaDB -outfmt 3
Even some crispy tool to easly convert this code into the full name of taxid will be appreciated. Thanks.