Question: How to extract from a fasta file, all the protein sequences that have more than 800 aa?
0
gravatar for ayixon
5 weeks ago by
ayixon0
ayixon0 wrote:

How to extract from a file all the protein sequences that have more than 800 aa using linux terminal?

sequence assembly • 119 views
ADD COMMENTlink modified 5 weeks ago by cpad01125.3k • written 5 weeks ago by ayixon0

Solved. Thank you very much. The perl script worked fine.

ADD REPLYlink written 5 weeks ago by ayixon0
2
gravatar for genomax
5 weeks ago by
genomax48k
United States
genomax48k wrote:

How To Filter Multi Fasta By Length??

ADD COMMENTlink written 5 weeks ago by genomax48k
2
gravatar for cpad0112
5 weeks ago by
cpad01125.3k
cpad01125.3k wrote:

For future reference, to filter a multifasta file for sequences with more than 800 aa,

$ seqkit seq -m 800 test.fa

-m = minimum length of the sequence to be printed

ADD COMMENTlink modified 5 weeks ago • written 5 weeks ago by cpad01125.3k
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