Question: Why parametric linkage analysis on Merlin gives zero "0" LOD score?
1
gravatar for eDNAuRNA
19 months ago by
eDNAuRNA20
eDNAuRNA20 wrote:

Hi all,

I am using Merlin for linkage analysis of large families. The SNP genotype file contains about 150K SNPs. I used Alohomora tool to get merlin input files. I can see negative, positive and zero LOD scores with I am trying single-point parametric linkage analysis with different models. But when I go for multi-point parametric linkage analysis with the same data, merlin gives the out put with zero LOD score on all markers of all chromosomes. I have tried many things but I am unable to trouble shoot it. An urgent help will be appreciated.

Thanks

snp software error • 652 views
ADD COMMENTlink modified 19 months ago by RamRS25k • written 19 months ago by eDNAuRNA20

Please read posts under https://biostars.org/t/how-to

This post is a question about a tool, not a tool-announcement post.

ADD REPLYlink written 19 months ago by RamRS25k
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