Question: gff to GFF3 converter
gravatar for saadleeshehreen
2.8 years ago by
saadleeshehreen70 wrote:

Hi, For running Proteinortho 5 I need to supply a .gff file. My .gff file is like that

> NZ_FOTL01000022.1       Protein Homology        CDS     284     1399  
> .       -       0       ID=cds0;Parent=gene0;Dbxref=Genbank:WP_0
> 67148436.1;Name=WP_067148436.1;gbkey=CDS;inference=COORDINATES: similar to AA sequence:RefSeq:WP_011954378.1;product=radical SAM
> protein ;protein_id=WP_067148436.1;transl_table=11

But the sample .gff file from the software is following

> gi|12345678|ref|NC_012345.1|    sim     CDS     1       1       .     
> +       .       ID=C_1;

How can I convert my files to theirs?


software error • 2.6k views
ADD COMMENTlink written 2.8 years ago by saadleeshehreen70

How is software error a relevant tag here?

ADD REPLYlink written 2.8 years ago by Ram32k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2156 users visited in the last hour