Visualizing MEME results togeather with a Phylogenetic Tree
2
0
Entering edit mode
3.1 years ago
venuraherath ▴ 20

Hi,

Are there any programs/ tools available in order to achieve the above task? (Preferably a GUI solution than command line)

Thank you in advance,

Venura

meme phylogeny domain protein motif • 860 views
ADD COMMENT
1
Entering edit mode
17 months ago
letunic ▴ 10

iTOL now supports MEME results as a dataset type. Check https://itol.embl.de/help.cgi#meme for details. You can simply drag-drop a MEME XML results file onto an iTOL tree, where the leaf IDs match the sequence IDs from the MEME file.

ADD COMMENT
0
Entering edit mode
3.1 years ago
Sishuo Wang ▴ 210

The best I can come up with would be iTOL though it may not well meet your requirements.

ADD COMMENT
0
Entering edit mode

Hi Shishuo,

Thank you for the reply. I contacted Ivica (creator) of iTOL as well and requesting him to add that feature i.e. direct input MEME output. He told me if there are many requests he might consider if not "no". Thanks, Venura

ADD REPLY
1
Entering edit mode

Hi venuraherath, PhyD3 is a newly released tool that is somewhat similar to iTOL, maybe they can help you with it?

ADD REPLY
0
Entering edit mode

Thank you so much!

ADD REPLY

Login before adding your answer.

Traffic: 1540 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6