When I use bedtools intersect funtion how i can sort which have 10 bases or longer overlap in overlap.bed?
what kind of command i can enter?
If you want to require a minimum threshold of overlap between elements in reference and map sets, you could do the following:
$ bedops --element-of 10 reference.bed map.bed > answer.bed
The file answer.bed will contain elements in reference.bed which overlap elements in map.bed by ten or more bases.
Login before adding your answer.
Use of this site constitutes acceptance of our User Agreement and Privacy