I have recently downloaded a bunch of sra files. and i like to convert them to fastq paired reads. It works by doing this :
./fastq-dump --split-files /Users/medsmit/ncbi/public/sra/SRR3501908.sra
But I need a way to convert them all together.
I was trying this
for i in `ls /Users/medsmit/ncbi/public/sra/*.sra' ; do ./fastq-dump -- split-files $f; done
But definitely doing some silly mistake as its not working. Can anyone please help me? Thank you, Suparna