News: webserver of TCGA data www.tcgaportal.org
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gravatar for xushutan
2.5 years ago by
xushutan40
xushutan40 wrote:

Hi everyone,

I build a website for manipulating TCGA data. www.tcgaportal.org

You can use this server to visualize survival data in different cancers and cancer subtype samples, You can check gene expression in cancer subtypes, in Pan-cancer and normal tissues. You can also check the correlation between gene expression (RNA-seq) and methylation; gene expression and mutation (for now only in Kidney KIRC; other cancer data will be uploaded later). Enjoy :)

rna-seq news genome gene • 1.1k views
ADD COMMENTlink modified 2.5 years ago • written 2.5 years ago by xushutan40

Please provide descriptive information about the portal. What distinguishes it from other TCGA data portals that are already out there (cBioPortal, LinkedOmics).

ADD REPLYlink modified 2.5 years ago • written 2.5 years ago by genomax92k

Thanks. A brief description is added.

ADD REPLYlink written 2.5 years ago by xushutan40

LinkedOmics does a superset of the functionality offered here - almost all except pan cancer. What sets you apart? Disclaimer: I'm part of the LinkedOmics dev team.

ADD REPLYlink written 2.5 years ago by RamRS30k

Nice to meet you here. Yes, there are many servers for TCGA data. I also use cBioportal and OncoLnc. And your website looks well estabilshed too. Hope my server can do some help for bioinformatiers. Also, if anyone find errors or has recommendation on analyzing TCGA data, please leave comments.

ADD REPLYlink modified 2.5 years ago • written 2.5 years ago by xushutan40
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