Question: How to download FASTA file from psRNAtarget
0
gravatar for ebrahimi.re67
18 months ago by
ebrahimi.re670 wrote:

Hi all, I want to download FASTA sequence from the psRNAtarget. the problem is that for downloading them I should click on each link. Unfortunately, there are 72 pages, and in each page 30 links. I use this script " wget -r url", but it only works for page 1, not all 71 remain pages. Is there anyone help me?

many thanks

ADD COMMENTlink modified 18 months ago • written 18 months ago by ebrahimi.re670

It is unclear exactly what you are trying to download (everything on this page?) but if you go to the download page I see that some genomes have a "download entire file" option.

ADD REPLYlink written 18 months ago by genomax75k

0 gravatar for ebrahimi.re67 just now by ebrahimi.re67 • 0 Absolutely not all of them, this website is used for target gene prediction, so I did it, and the 2335 genes have been predicted, so I need to get their FATSA sequence, as well. I checked their accession on NCBI, but no result could be seen, so I want to download them and then blast.

ADD REPLYlink written 18 months ago by ebrahimi.re670

As for your question that may be a limitation of the website you are trying to use. Perhaps there are ways of using wget to work with multiple results pages. See if something on this page is useful.If your web page results are sequentially numbered then it should be easy to do.

ADD REPLYlink written 18 months ago by genomax75k
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