Installing Seurat for scRNA

Question

[anu014]

Hello Biostars,

Can anyone tell how to escape this error encountered during installation of Seurat (https://cran.r-project.org/web/packages/Seurat/index.html)?:

command:  R CMD INSTALL httpuv  (httpuv is dependency for Seurat)
/usr/local/lib/R/etc/Makeconf:168: recipe for target 'callbackqueue.o' failed make: *** [callbackqueue.o] Error 1 ERROR: compilation failed for package 'httpuv'
* removing '/home/anupriya/R/x86_64-pc-linux-gnu-library/3.5/httpuv'

or how to disable package httpuv during installation, as I am installing on server so GUI is not supported?

Please suggest. Thank you. :)

[steve]

looks like you're gonna have to troubleshoot the install of httpuv in order to get it to work. Sever vs. GUI shouldnt matter. Try installing the package alone, then start Googling all the error messages it throws