I am the first year PhD student in University .
Basically, I'm new to PLINK (obviously). Sorry for asking quite a silly question.
I am doing the selection signal with canine and try to use the HP-EXX (https://github.com/joepickrell/xpehh) to get the haplotype score.
However, I only have Plink files (ped, map). I want to know are there any way to convert my plink files to haplotype format. The software require the input haplotype format is one haplotype per line, with alleles coded as 1 and 0.