Inversion detection between 2 genomes

Question

[Picasa]

Hi all,

I am comparing two very similar genomes and looking to see whether there are some part that are rearranged such as inversion.

Do you know any tools that can help me to do this ?

By the past, I used nucmer but if you know something else, I would be happy to hear.

Thanks !

Answer 1

[WouterDeCoster]

I believe Assemblytics (which uses mummer) does what you need