Question: Freebayes command stopped due to lack of space
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amcheroo • 0 wrote:
Hi, the server I am working with was out of space; I already cleaned it and it has enough space now. Before that, I was using freebayes programme for SNP calling, but as this space thing happened, it seems that the SNP calling is stopped now, cause when I use ls -lht nameofthefile.vcf the date and the hour consists on a week ago, but when I use htop, apparently it is still working. Does anyone know how to restart that command? Thank you in advance
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modified 5 weeks ago
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finswimmer ♦ 3.6k
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5 weeks ago by
amcheroo • 0
Find its PID number and use the
killcommand.(in
htopyou can useF9for this)Thank you for your answer, but in that way, I will definitely kill the process but it wouldn't finish. I would like to restart not from zero but from the moment it stops. Is there any possible way?
I'm not familiar with FreeBayes itself, but it is quite rare that programs support 'resuming'. If you had suspended the program with
Ctrl-Z, you could usefgto resume it, but if the process has been disowned I don't believe there is any way to retrieve it. You'll just have to kill it and start over (unless someone knows better than me).