I am trying to find a way to understand the effect of a splice site mutations (GT--AG or AC--CT) in mouse genome. I want to know if there is a manual method or tool(s) which can predict the effect of splice site mutations in MOUSE genome.
Most of the tool I saw are designed for Human. It would be helpful if anyone can suggest similar tool(s) or method for Mouse.
Is there any tools like MutationTaster or any other for mouse?
I tried to use Spliceman, but I am not sure that one is the correct tool for my query. Also I didnt get any exact effect of how that splice mutation will be affecting transcription.
Also is there a possibility to see the effect of these mutations on my RNA-seq data of mouse.
I will appreciate any help.