Hi all, I was using unikalow to do denovo assembly. The test.config set as:
max_rd_len=100 [LIB] avg_ins=57533 reverse_seq=0 asm_flags=3 rank=1 pair_num_cutoff=3 map_len=32 q1=1_1.fastq q2=1_2.fastq
the command was:
unikalow -kmer 61 -trim 90 <test.config> test_assembly
The error reported as: Segmentation fault (core dumped)
So I looked "-help" and found no parameter to assign memory. I searched internet and followed the suggestion using gdb to see the core file. The core file reported: Core was generated by `/unikalow/bin/ssaha_reads -file 23 readfile_0000_trim'. Program terminated with signal 11, Segmentation fault.
Is there any advice how I should fix it please? Thank you.