Question: Downloading 16S sequences using JGI portal
0
gravatar for chrystiam.sossa
11 months ago by
chrystiam.sossa0 wrote:

Hi everyone, Do you know if there a way to download 16S sequences for a specific collection of the https://jgi.doe.gov/. I want to download al 16S sequences for this collection https://genome.jgi.doe.gov/portal/TheHunmicrobiome/TheHunmicrobiome.info.html in order to be used in the DADA2 pipeline and picking OTUs

Many thanks,

Chrystian

ADD COMMENTlink modified 11 months ago • written 11 months ago by chrystiam.sossa0

Hi Arup, thanks for the information. I did in that way, but that way is to download complete genomes, the sequencing reports. etc... I want just the 16S rDNA sequences for the bacterias isolated there.

Kind regards,

Chrystian

ADD REPLYlink written 11 months ago by chrystiam.sossa0
0
gravatar for arup
11 months ago by
arup1.4k
India
arup1.4k wrote:

To download the data first you have to create a JGI account. Log in to your JGI account navigate to TheHunmicrobiome and click on the Download link and after accepting the data usage policy you will be redirected to the following page.

JGI download page

Then use of any of the methods mentioned in the following article to download all the datasets.

https://genome.jgi.doe.gov/portal/help/download.jsf

ADD COMMENTlink written 11 months ago by arup1.4k
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