Question: Dummy / simulated genomic data
1
gravatar for Nicolas Rosewick
4 months ago by
Belgium, Brussels
Nicolas Rosewick6.9k wrote:

Hi,

For some testing purpose I would like to use some dummy genomic data (VCF, BAM and FASTQ - for WGS, WES, RNA-Seq and gene panels). Before trying to simulate them I would like to know if there is such dataset already available somewhere ?

Thank you

dummy simulated data • 187 views
ADD COMMENTlink written 4 months ago by Nicolas Rosewick6.9k

Don't get me wrong, but according to your CV on Github, you almost have a decade of experience in the field with numerous publications where you analyzed NGS data. I hope this is not inappropriate to say that, but this question sounds kind of like your account being hacked or something (I really mean no offense).

ADD REPLYlink modified 4 months ago • written 4 months ago by ATpoint9.1k
2

No my account was not hacked. I know how to simulate genomic data but I do not want to reinvent the wheel if there is already some simulated datasets available ;) and no offense taken ;)

ADD REPLYlink modified 4 months ago • written 4 months ago by Nicolas Rosewick6.9k
4

There are plenty of real datasets available. Look at the Genome in a Bottle data site. All data is available on GiB GitHub site.

ADD REPLYlink written 4 months ago by genomax58k

I'll take a look. Thanks

ADD REPLYlink written 4 months ago by Nicolas Rosewick6.9k
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