I have been using RAST for bacterial genome annotation for about 1 year. In this time I've only worked with a few genomes, but now I am working with a huge list of bacterial genomes (precisely 108 genomes). What I want to know is: is there any way that I can submit all these 108 genomes (Genbank files) to the RAST server at the same time? Submitting one by one would be really time consuming and I would do that only if there is really no other option. The subsequent program (PanWeb) will be used for pan-genome analysis and it requires EMBL files standardized by RAST as input files. Do you have any suggestion on how I can manage to process these files? Maybe using another annotation server? Maybe another strategy?