Question: Calculating alignment scores ?
gravatar for sunnykevin97
2.5 years ago by
sunnykevin97140 wrote:

Hi, very new to NGS. I used most popular BWA mem for aligning Illumina pair end reads

How to calculate all these parameters for an aligned bam file ? 1) sensitivity 2) match rate and mismatch rate 3) Error rate 4) Precision and Recall


ADD COMMENTlink written 2.5 years ago by sunnykevin97140

Are you after alignment stats? You could try weeSAM - it can provide stats from SAM/BAM alignment files.

More info:

ADD REPLYlink modified 2.5 years ago • written 2.5 years ago by Sej Modha4.7k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1879 users visited in the last hour