Question: Qiime - problem with biom package in normalization
0
gravatar for kperlejewski
7 months ago by
kperlejewski0 wrote:

Hi,

I want to use Qiime DESeq2 normalization by command. I need to install "biom" package in R to make it work iut I have this comment:

Warning message: package ‘biom’ is not available (for R version 3.5.0)

What can I do with that? It's the newest R version.

qiime biom R • 436 views
ADD COMMENTlink modified 7 months ago by Dattatray Mongad260 • written 7 months ago by kperlejewski0
0
gravatar for zx8754
7 months ago by
zx87546.8k
London
zx87546.8k wrote:

Relevant post, with many many reasons:

And CRAN says it is archived, so the question is:

ADD COMMENTlink modified 7 months ago • written 7 months ago by zx87546.8k
0
gravatar for Dattatray Mongad
7 months ago by
National Centre for Cell Science, Pune
Dattatray Mongad260 wrote:

biom package is not supported now. You can download it from here and install it manually using install.packages() cmd in R.

ADD COMMENTlink written 7 months ago by Dattatray Mongad260

How to do that ?

I typed:

install.packages(biom_0.3.8.tar.gz) Error in install.packages(biom_0.3.8.tar.gz) : object 'biom_0.3.8.tar.gz' not found

ADD REPLYlink written 3 months ago by Payal30
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2463 users visited in the last hour