Question: Qiime - problem with biom package in normalization
0
gravatar for kperlejewski
11 months ago by
kperlejewski0 wrote:

Hi,

I want to use Qiime DESeq2 normalization by command. I need to install "biom" package in R to make it work iut I have this comment:

Warning message: package ‘biom’ is not available (for R version 3.5.0)

What can I do with that? It's the newest R version.

qiime biom R • 692 views
ADD COMMENTlink modified 11 months ago by Dattatray Mongad320 • written 11 months ago by kperlejewski0
1
gravatar for Dattatray Mongad
11 months ago by
National Centre for Cell Science, Pune
Dattatray Mongad320 wrote:

biom package is not supported now. You can download it from here and install it manually using install.packages() cmd in R.

ADD COMMENTlink written 11 months ago by Dattatray Mongad320

How to do that ?

I typed:

install.packages(biom_0.3.8.tar.gz) Error in install.packages(biom_0.3.8.tar.gz) : object 'biom_0.3.8.tar.gz' not found

ADD REPLYlink written 7 months ago by Payal40
0
gravatar for zx8754
11 months ago by
zx87547.8k
London
zx87547.8k wrote:

Relevant post, with many many reasons:

And CRAN says it is archived, so the question is:

ADD COMMENTlink modified 11 months ago • written 11 months ago by zx87547.8k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1708 users visited in the last hour