Question: Tools for scRNAseq
1
gravatar for wenbinm
14 months ago by
wenbinm10
USA
wenbinm10 wrote:

Hi there,

Any suggestions on R or python packages to analyze tumor scRNAseq data, if I want to distinguish malignant cells from normal cells?

Thank you!

rna-seq R genome • 470 views
ADD COMMENTlink modified 5 weeks ago by alireza.khodadadi.j30 • written 14 months ago by wenbinm10

Seurat,Linnorm,Dimm-SC´╝îIt can all be done, and I'm glad it helps

ADD REPLYlink written 4 weeks ago by Biological information research group of Harbin medical university daqing campus0
1
gravatar for genomax
14 months ago by
genomax73k
United States
genomax73k wrote:

@Sean Davis has a comprehensive list of programs related to all things single cell here.

ADD COMMENTlink modified 14 months ago • written 14 months ago by genomax73k

Thank you for your response! I also saw that list. Do you know some specific tools? I found several papers first estimated CNV based on transcription data (cells with many CNVs are tumor cells), but they didn't tell which tool they were using (maybe everybody writes their own code and there is no universal tool?)

ADD REPLYlink written 14 months ago by wenbinm10
0
gravatar for alireza.khodadadi.j
5 weeks ago by
alireza.khodadadi.j30 wrote:

single cell RNA sequencing

ADD COMMENTlink modified 5 weeks ago • written 5 weeks ago by alireza.khodadadi.j30

Please do not post this in every single cell RNA thread. You have already created a tools post for your software which is the appropriate way of announcing a new tool.

ADD REPLYlink written 5 weeks ago by genomax73k
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