Question: Tools for scRNAseq
0
gravatar for wenbinm
8 months ago by
wenbinm0
USA
wenbinm0 wrote:

Hi there,

Any suggestions on R or python packages to analyze tumor scRNAseq data, if I want to distinguish malignant cells from normal cells?

Thank you!

rna-seq R genome • 280 views
ADD COMMENTlink modified 8 months ago by genomax65k • written 8 months ago by wenbinm0
0
gravatar for genomax
8 months ago by
genomax65k
United States
genomax65k wrote:

@Sean Davis has a comprehensive list of programs related to all things single cell here.

ADD COMMENTlink modified 8 months ago • written 8 months ago by genomax65k

Thank you for your response! I also saw that list. Do you know some specific tools? I found several papers first estimated CNV based on transcription data (cells with many CNVs are tumor cells), but they didn't tell which tool they were using (maybe everybody writes their own code and there is no universal tool?)

ADD REPLYlink written 8 months ago by wenbinm0
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