How to obtain alignment figure?
1
0
Entering edit mode
2.7 years ago
MAPK ★ 1.7k

I need to create an alignment figure like this (http://journals.plos.org/plosone/article/figure/image?size=large&id=10.1371/journal.pone.0165965.g002) for my infile.fasta. I tried clustalw -INFILE=infile.fasta -ALIGN, but it's nowhere close to what they have in the paper. How can I create this alignment figure?

clustalw alignment • 542 views
ADD COMMENT
1
Entering edit mode

After you obtain the .aln file from ClustalW, import it into Jalview. I was able to get figure like that (albeit in colour).

ADD REPLY
2
Entering edit mode
2.7 years ago
Joe 19k

You can also use ESPript to generate similar (if not more advanced) alignment figures.

ADD COMMENT

Login before adding your answer.

Traffic: 2525 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6