I have a very large BCF file from which I want to extract a list of SNPs (also very large). The SNPs of interest are in a tab delimited file with two columns chromosome and position. I have tried the bcftools by using
view function and the options
-R like bellow but I haven't had success.
bcftools view -T mylist.txt file.bcf -Ou -o filteredfile.bcf
Thanks in advance