Question: STAR indexing gets killed on its own at a particular time (while generating suffix arrays)
1
shuksi1984 • 60 wrote:
I used the following command to build STAR index:
/path/to/STAR --runThreadN 2 --runMode genomeGenerate --genomeDir /path/to/star_index
--genomeFastaFiles /path/to/Homo_sapiens.GRCh38.dna.primary_assembly.fa --sjdbGTFfile /path/to/Homo_sapiens.GRCh38.86.gtf
The process gets "killed" after a certain point of time. I am running the process on 32G RAM, 1TB HDD, and 4 cores and STAR version 2.6. What could be the issue, memory allocation or STAR version?
ADD COMMENT
• link
•
modified 2.1 years ago
by
caggtaagtat • 1.3k
•
written
2.1 years ago by
shuksi1984 • 60
